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Finally Microsoft have released a support article which details how to change the MSCRM web site ports correctly. This also fixes the workflow doesn’t work et al issues (see here). This is great to have, not because details a third way to do it (so besides the SQL edit and IFD tool), but that it actually fills in the gaps for everything else you need to do such as reconfiguring Outlook clients and data migration tools etc…

You can read it at http://support.microsoft.com/kb/947423/